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Quantum techniques for stochastic mechanics (course) lecture 2 (Rev #2)

Quantum Techniques for Stochastic Mechanics

  • Lecture 2 of 4

  • Link to course homepage

  • Quantum Techniques for Stochastic Mechanics, by Jacob Biamonte, QIC 890/891 Selected Advanced Topics in Quantum Information, The University of Waterloo, Waterloo Ontario, Canada, (Spring term 2012).

  • Given Aug 9th, 2012 in Waterloo Canada

Lecture Content

  • Review of lecture 1

  • Probabilities vs amplitudes (chapter 4)

  • Operators (creation and annihilation)

  • Amoeba field theory

  • Preamble to stochastic mechanics vs quantum mechanics

  • Note: the lecture content here is to be read along with the youtube video of the course. It should contain what was written on the board. Without the video, it might not make sense.

The master equation vs the rate equation

A stochastic petri net has

  • k k species
  • x i x_i is the concetration of the ith species

we want to know

ddtx i=??? \frac{d}{d t} x_i = ???

one for each 1ik 1\leq i \leq k.

  • The RHS: sum of terms, one term for each transition in the Petri net

For each transition we end up with a term like this

ddtx i=r(n im i)x 1 m 1x k m k \frac{d}{d t} x_i = r (n_i - m_i)x_1^{m_1}\cdots x_k^{m_k}
  • n i n_i is the number of times species x i x_i appears in the output
  • likewise for m i m_i but instead for input

We will use index free notation.

x=(x 1,,x k)[0,) x = (x_1,\ldots, x_k) \in [0, \infinity)

is the concentration vector and

  • input vector: m=(m 1,,m k)N k m = (m_1, \ldots, m_k) \in N^k

  • output vector: n=(n 1,,n k)N k n = (n_1, \ldots, n_k) \in N^k

  • notation: x m=x 1 m 1x k m k x^m = x_1^{m_1}\cdots x_k^{m_k}


ddt=r(nm)x m \frac{d}{d t} = r(n - m)x^m
  • T T is the set of transitions τT \tau \in T
  • r(τ) r(\tau) is the rate constant
ddtx= τTr(τ)[n(τ)m(τ)]x m(τ) \frac{d}{d t} x = \sum_{\tau \in T} r(\tau) [n(\tau) - m(\tau)]x^m(\tau)


  • In birth, one rabbit comes in and two go out. This is a caricature of reality: these bunnies reproduce asexually, splitting in two like amoebas.

  • In predation, one wolf and one rabbit come in and two wolves go out. This is a caricature of how predators need to eat prey to reproduce.

  • In death, one wolf comes in and nothing goes out. Note that we are pretending rabbits don’t die unless they’re eaten by wolves.

  • R(t) R(t) rabbits

  • W(t) W(t) wolves

The rate equations of motion are

ddtR(t)=β(21)R(t)+γ(01)R(t)W(t) \frac{d}{d t} R(t) = \beta (2-1)R(t) + \gamma (0-1) R(t) W(t)
ddtW(t)=δ(01)W(t)+γ(21)R(t)W(t) \frac{d} {d t} W(t) = \delta (0-1) W(t) + \gamma (2-1) R(t) W(t)

The master equation

  • Let ψ n 1,,n kbetheprobabilitythatwehave \psi_{n_1, \ldots, n_k} be the probability that we have n_1$